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[1.0.0] - Gold Lion - 2020-10-16
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@mashehu mashehu released this 16 Oct 11:11
· 37 commits to master since this release
1.0.0
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v1.0.0 (Gold Lion) - [2020-10-16]

Initial release of nf-core/cageseq, created with the nf-core template.

Pipeline summary

  1. Input read QC (FastQC)
  2. Adapter + EcoP15 + 5'G trimming (cutadapt)
  3. (optional) rRNA filtering (SortMeRNA),
  4. Trimmed and filtered read QC (FastQC)
  5. Read alignment to a reference genome (STAR or bowtie1)
  6. CAGE tag counting and clustering (paraclu)
  7. CAGE tag clustering QC (RSeQC)
  8. Present QC and visualisation for raw read, alignment and clustering results (MultiQC)
Assets 2