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Simplify circrna_discovery subworkflow #122

Merged
merged 25 commits into from
May 28, 2024
Merged

Simplify circrna_discovery subworkflow #122

merged 25 commits into from
May 28, 2024

Commits on May 24, 2024

  1. Simplify STAR and SEGEMEHL discovery

    @nictru
    nictru committed May 24, 2024
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  2. Simplify CIRCEXPLORER2 workflow

    @nictru
    nictru committed May 24, 2024
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  3. Simplify CIRCRNA_FINDER

    @nictru
    nictru committed May 24, 2024
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  4. Simplify FIND_CIRC

    @nictru
    nictru committed May 24, 2024
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  5. Simplify CIRIQUANT

    @nictru
    nictru committed May 24, 2024
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  6. Simplify DCC

    @nictru
    nictru committed May 24, 2024
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  7. Simplify MAPSPLICE

    @nictru
    nictru committed May 24, 2024
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  8. Restructure discovery tool calls

    @nictru
    nictru committed May 24, 2024
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  9. Restructure discovery downstream workflows

    @nictru
    nictru committed May 24, 2024
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  10. Simplify annotation workflow

    @nictru
    nictru committed May 24, 2024
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  11. Change the way discovery tools are disabled

    @nictru
    nictru committed May 24, 2024
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  12. Switch segemehl to bed output

    @nictru
    nictru committed May 24, 2024
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  13. Implement central BSJ filtering

    @nictru
    nictru committed May 24, 2024
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  14. Implement circexplorer2 unification

    @nictru
    nictru committed May 24, 2024
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  15. Unify find_circ

    @nictru
    nictru committed May 24, 2024
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  16. Unify ciriquant

    @nictru
    nictru committed May 24, 2024
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  17. Unify DCC

    @nictru
    nictru committed May 24, 2024
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  18. Unify mapsplice

    @nictru
    nictru committed May 24, 2024
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  19. Unify circrna_finder

    @nictru
    nictru committed May 24, 2024
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  20. Rename RUN to MAIN in all occurrences

    @nictru
    nictru committed May 24, 2024
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  21. Add circrna_finder unify version capture

    @nictru
    nictru committed May 24, 2024
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  22. Remove tool-specific filtering artifacts

    @nictru
    nictru committed May 24, 2024
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  23. Remove technical debt with former "results" channel

    @nictru
    nictru committed May 24, 2024
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  24. Remove unnecessary checks if circrna_discovery is enabled

    @nictru
    nictru committed May 24, 2024
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Commits on May 27, 2024

  1. Fix code style problems

    @nictru
    nictru committed May 27, 2024
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