better directory

nf-core · Sep 28, 2018 · 89131dc · 89131dc
1 parent 78a7202
commit 89131dc
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/main.nf b/main.nf
@@ -596,8 +596,9 @@ process mapdamageGenome1 {
     output:
         set val(name), file("res/*.pdf") into mapdamage_result_genome1
     script:
+
         """
-        mapDamage -i $align -r $fasta -d res
+        mapDamage -i $align -r $fasta -d $name
         """
 }
 
@@ -617,10 +618,10 @@ process mapdamageGenome2 {
         val(orgaName) from name2_mapdamage
         file(fasta) from genome2mapdamage
     output:
-        set val(name), file("res/*.pdf") into mapdamage_result_genome2
+        set val(name), file("*") into mapdamage_result_genome2
     script:
         """
-        mapDamage -i $align -r $fasta -d res
+        mapDamage -i $align -r $fasta -d $name
         """
 }