If no file is picked up then something is wrong with your input file declaration
The path must be enclosed in quotes (' or ")
The pipeline can't take a list of multiple input files - it takes a glob expression. If your input files are scattered in different paths then we recommend that you generate a directory with symlinked files.
The pipeline can't take a list of multiple input files - it takes a glob expression. If your input files are scattered in different paths then we recommend that you generate a directory with symlinked files.
If you still have an issue with running the pipeline then feel free to contact us. Have a look at the pipeline website to find out how.
If you have problems that are related to Nextflow and not our pipeline then check out the Nextflow gitter channel or the google group.