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Release v1.1.1 #90

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Mar 2, 2023
Merged

Release v1.1.1 #90

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b44d4a5
Set version for release
Mar 2, 2023
019f345
Trivial change for CI
Mar 2, 2023
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10 changes: 4 additions & 6 deletions CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.1.1dev - xxxx-xx-xx

### `Added`
## v1.1.1 - 2023-03-02

### `Fixed`

Expand All @@ -21,13 +19,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Fixed`

- [[#55](https://github.com/nf-core/differentialabundance/pull/55)] - Don't drop dimensions in report with single informative variable ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@mashehu](https://github.com/mashehu))
- [[#55](https://github.com/nf-core/differentialabundance/pull/55)] - Don't drop dimensions in report with single informative variable ([@pinin4fjords](https://github.com/pinin4fjords), review by [@mashehu](https://github.com/mashehu))
- [[#57](https://github.com/nf-core/differentialabundance/issues/57)] - Update module shinyngs/validatefomcomponents and bump other shinyngs modules to resolve [[#56](https://github.com/nf-core/differentialabundance/issues/56)] ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#65](https://github.com/nf-core/differentialabundance/pull/65)] - Update shinyngs modules to latest to resolve palette issues reported by [@Shellfishgene](https://github.com/Shellfishgene) ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@mashehu](https://github.com/mashehu))
- [[#65](https://github.com/nf-core/differentialabundance/pull/65)] - Update shinyngs modules to latest to resolve palette issues reported by [@Shellfishgene](https://github.com/Shellfishgene) ([@pinin4fjords](https://github.com/pinin4fjords), review by [@mashehu](https://github.com/mashehu))
- [[#67](https://github.com/nf-core/differentialabundance/issues/67)] - Error when contrast is blocking by multiple variables ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@clstacy](https://github.com/clstacy), review by [@jfy133](https://github.com/jfy133))
- [[#71](https://github.com/nf-core/differentialabundance/pull/71)] - Add palette options, bring full check.names fixes from upstream, closing [[#68](https://github.com/nf-core/differentialabundance/issues/68)] reported by [@Shellfishgene](https://github.com/Shellfishgene), [[#69](https://github.com/nf-core/differentialabundance/issues/69)] reported by [@clstacy](https://github.com/clstacy). ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@clstacy](https://github.com/clstacy), review by [@matthdsm](https://github.com/matthdsm), [@WackerO](https://github.com/WackerO))
- [[#73](https://github.com/nf-core/differentialabundance/pull/73)] - Make `--matrix`, `--input`, `--features` accept either CSV,TXT or TSV files as input ([@apeltzer](https://github.com/apeltzer), review by [@pinin4fjords](https://github.com/pinin4fjords))
- [[#75](https://github.com/nf-core/differentialabundance/pull/75)] - Bump deseq2/differential for check.names fix ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@apeltzer](https://github.com/apeltzer))
- [[#75](https://github.com/nf-core/differentialabundance/pull/75)] - Bump deseq2/differential for check.names fix ([@pinin4fjords](https://github.com/pinin4fjords), review by [@apeltzer](https://github.com/apeltzer))
- [[#76](https://github.com/nf-core/differentialabundance/pull/76)] - Fix up non-gtf operation using matrix as annotation source ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@apeltzer](https://github.com/apeltzer), review by [@apeltzer](https://github.com/apeltzer))
- [[#82](https://github.com/nf-core/differentialabundance/pull/82)] - Address v1.1.0 pre-release feedback (subway map fixes) ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@mashehu](https://github.com/mashehu))

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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -313,7 +313,7 @@ manifest {
description = 'Differential abundance analysis'
mainScript = 'main.nf'
nextflowVersion = '!>=22.10.1'
version = '1.1.1dev'
version = '1.1.1'
doi = '10.5281/zenodo.7568000'
}

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