Fix Issue #592

nf-core · Oct 27, 2020 · 6e57f33 · 6e57f33
1 parent 31a47bc
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,13 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [2.2.1] - 2020-10-20
+
+### `Fixed`
+
+- [#591](https://github.com/nf-core/eager/issues/591) - Fixed offset underlines in lane merging diagram in docs
+- [#592](https://github.com/nf-core/eager/issues/592) - Fixed issue where supplying Bowtie2 index reported missing bwamem_index error
+
 ## [2.2.0] - Ulm - 2020-10-20
 
 ### `Added`

diff --git a/main.nf b/main.nf
@@ -348,6 +348,7 @@ if( params.bt2_index != '' && params.mapper == 'bowtie2' ){
         .into {bt2_index; bt2_index_bwamem}
 
     bwa_index = Channel.empty()
+    bwa_index_bwamem = Channel.empty()
 }
 
 // Validate BAM input isn't set to paired_end
@@ -855,6 +856,7 @@ if( params.bwa_index == '' && !params.fasta.isEmpty() && (params.mapper == 'bwaa
     mkdir BWAIndex && mv ${fasta}* BWAIndex
     """
     }
+
     bt2_index = Channel.empty()
 }