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Make a few tutorials on how to run for different contexts #466

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jfy133 opened this issue Jun 16, 2020 · 2 comments · Fixed by #538
Closed
4 of 5 tasks

Make a few tutorials on how to run for different contexts #466

jfy133 opened this issue Jun 16, 2020 · 2 comments · Fixed by #538
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@jfy133 @TCLamnidis @aidaanva
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documentation pending Addressed on branch waiting for related PR
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hackathon-tasks
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2.2 "Ulm"

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jfy133 commented Jun 16, 2020 •
edited

This will be useful for future training and new people coming in after posting of the print.

Topics:

  • How to contribute a new module (maybe we can write this along side bowtie2? @apeltzer )
  • How to run for human data (shotgun, snpCapture)
  • How to run for pathogen data (phylogenies, functional stuff)
  • How to run for microbiome work data (off-target profiling, )
  • How to use profiles (and make custom ones that can be shared for publication <- noting inheritance rules)
@jfy133 jfy133 self-assigned this Jun 16, 2020
@jfy133 jfy133 added this to the V2.2 "Ulm" milestone Jun 16, 2020
@jfy133 jfy133 modified the milestones: V2.2 "Ulm", V2.3 "Wangen" Jun 16, 2020
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jfy133 commented Jul 7, 2020

Profiles DONE: df398ce

@jfy133 jfy133 modified the milestones: V2.3 "Wangen", V2.2 "Ulm" Jul 7, 2020
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jfy133 commented Jul 7, 2020

New module tutorial is already here basically, https://github.com/nf-core/eager/blob/dev/docs/code_contribution.md

@jfy133 jfy133 added this to Existing pipelines in hackathon-tasks Jul 13, 2020
@jfy133 jfy133 linked a pull request Aug 11, 2020 that will close this issue
Docs and schema update #538
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@jfy133 jfy133 mentioned this issue Oct 1, 2020
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@jfy133 jfy133 added the pending Addressed on branch waiting for related PR label Oct 1, 2020
@jfy133 jfy133 closed this as completed Oct 13, 2020
hackathon-tasks automation moved this from Existing pipelines to Done Oct 13, 2020
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Docs and schema update nf-core/eager
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@jfy133 @TCLamnidis @aidaanva