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Mixture of ids provided via --input: Please provide either SRA / ENA / DDBJ or Synapse ids! #116
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The ID should be in a text file that you provide as input. Please try: echo PRJNA625551 > ids.txt
nextflow run nf-core/fetchngs --input ids.txt --outdir results --input_type sra |
Now I get this:
params.config
ids.txt
|
Also getting the same error with SRR ids.
ids.txt
params.config
|
Same issue here with SRR.
ids.txt
System Info
|
The id (
The ids (
Command I used:
Not sure why this was happening but it might be worth re-trying after we have released v1.10.0. If the problem persists please feel free to re-open or create a new issue if unrelated. |
ids_list.csv |
Description of the bug
PRJNA625551 id is not recognised by the pipeline. Perhaps I am using it incorrectly.
Command used and terminal output
Relevant files
No response
System information
Nextflow/21.10.6
nf-core/2.1
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