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be less stringent with tests expectation #295

Merged
merged 2 commits into from
Feb 28, 2024
Merged

be less stringent with tests expectation #295

merged 2 commits into from
Feb 28, 2024

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maxulysse
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/fetchngs branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Feb 28, 2024 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f9ed63a

+| ✅ 154 tests passed       |+
#| ❔   5 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • nextflow_config - Config manifest.version should end in dev: 1.12.0

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.13
  • Run at 2024-02-28 11:36:42

@maxulysse
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I initially intended to merge this to try and fixed the tests in #294 but too late for that now

drpatelh
drpatelh approved these changes Feb 28, 2024
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@drpatelh drpatelh left a comment

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Thanks!

@drpatelh drpatelh merged commit 89e3716 into nf-core:dev Feb 28, 2024
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@drpatelh drpatelh drpatelh approved these changes

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@maxulysse @drpatelh