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Remove params.outdir from tests where required and update snapshots #296

Merged
merged 13 commits into from
Feb 29, 2024
Merged

Remove params.outdir from tests where required and update snapshots #296

merged 13 commits into from
Feb 29, 2024

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drpatelh
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@drpatelh drpatelh commented Feb 28, 2024 •
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This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @drpatelh,

It looks like this pull-request is has been made against the drpatelh/nf-core-fetchngs master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the drpatelh/nf-core-fetchngs dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

@drpatelh drpatelh changed the base branch from master to dev February 28, 2024 12:09
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github-actions bot commented Feb 28, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f6cf223

+| ✅ 154 tests passed       |+
#| ❔   5 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • nextflow_config - Config manifest.version should end in dev: 1.12.0

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.13
  • Run at 2024-02-29 10:33:06

@drpatelh drpatelh mentioned this pull request Feb 28, 2024
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@maxulysse
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cf nf-core/modules#5007

@drpatelh drpatelh merged commit 03ac573 into nf-core:dev Feb 29, 2024
36 checks passed
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@sateeshperi sateeshperi sateeshperi approved these changes

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@drpatelh @maxulysse @sateeshperi