Merge pull request #249 from nf-core/bakta-ci

Add Bakta annotation to CI tests

.github/workflows/ci.yml

@@ -29,7 +29,7 @@ jobs:
         parameters:
           - "--annotation_tool prodigal"
           - "--annotation_tool prokka"
-          ## Warning: we can't test Bakta as uses more memory than available on GHA CIs
+          - "--annotation_tool bakta --annotation_bakta_db_downloadtype light"
 
     steps:
       - name: Check out pipeline code
@@ -57,6 +57,7 @@ jobs:
         parameters:
           - "--annotation_tool prodigal"
           - "--annotation_tool prokka"
+          - "--annotation_tool bakta --annotation_bakta_db_downloadtype light"
 
     steps:
       - name: Check out pipeline code
@@ -84,6 +85,7 @@ jobs:
         parameters:
           - "--annotation_tool prodigal"
           - "--annotation_tool prokka"
+          - "--annotation_tool bakta --annotation_bakta_db_downloadtype light"
 
     steps:
       - name: Check out pipeline code

CHANGELOG.md

@@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#238](https://github.com/nf-core/funcscan/pull/238) Added dedicated DRAMP database downloading step for AMPcombi to prevent parallel downloads when no database provided by user (by @jfy133)
 - [#235](https://github.com/nf-core/funcscan/pull/235) Added parameter `annotation_bakta_db_downloadtype` to be able to switch between downloading either full (33.1 GB) or light (1.3 GB excluding UPS, IPS, PSC, see parameter description) versions of the Bakta database. (by @jasmezz)
+- [#249](https://github.com/nf-core/funcscan/pull/249) Added bakta annotation to CI tests. (by @jasmezz)
 
 ### `Fixed`