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comBGC: add optional input parameter #256

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jasmezz opened this issue Apr 4, 2023 · 0 comments
Closed

comBGC: add optional input parameter #256

jasmezz opened this issue Apr 4, 2023 · 0 comments
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enhancement Improvement for existing functionality

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@jasmezz
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jasmezz commented Apr 4, 2023

Description of feature

As discussed in this thread in the funcscan Slack channel, it would be nice to be able to input a whole directory with BGC tool output files (with subdirectories of samples) instead of single files (as is the only option at the moment). Example output structure for antiSMASH that should be accepted as input:

antismash/
├── MAG001/
|   ├── index.html
|   ├── knownclusterblast/
|   └── more-antismash-output
├── MAG002/
|   ├── index.html
|   ├── knownclusterblast/
|   ├── more-antismash-output
└── MAG.../
    ├── index.html
    ├── knownclusterblast/
    └── more-antismash-output
@jasmezz jasmezz added the enhancement Improvement for existing functionality label Apr 4, 2023
@jasmezz jasmezz self-assigned this Apr 4, 2023
@jasmezz jasmezz added this to the 1.1 - British Beans on Toast milestone Apr 4, 2023
@jfy133 jfy133 closed this as completed Apr 21, 2023
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