Add checkm test profile #1528
jfy133ci.yml
on: pull_request
Run single test to checkm due to database download
16m 26s
Matrix: Run workflow profile
Matrix: Run pipeline with test data
Annotations
15 errors and 12 warnings
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Run workflow profile (test_virus_identification)
Process completed with exit code 1.
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Run workflow profile (test_binrefinement)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_binrefinement)
The operation was canceled.
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Run workflow profile (test_checkm)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_checkm)
The operation was canceled.
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Run workflow profile (test_adapterremoval)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_adapterremoval)
The operation was canceled.
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Run workflow profile (test_ancient_dna)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_ancient_dna)
The operation was canceled.
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Run workflow profile (test_busco_auto)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_busco_auto)
The operation was canceled.
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Run workflow profile (test_hybrid_host_rm)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_hybrid_host_rm)
The operation was canceled.
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Run workflow profile (test_hybrid)
The job was canceled because "test_virus_identification" failed.
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Run workflow profile (test_hybrid)
The operation was canceled.
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Run workflow profile (test_single_end)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run workflow profile (test_single_end)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run workflow profile (test_concoct)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run workflow profile (test_concoct)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run workflow profile (test_host_rm)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run workflow profile (test_host_rm)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run workflow profile (test_virus_identification)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run workflow profile (test_virus_identification)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run pipeline with test data (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run pipeline with test data (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run single test to checkm due to database download
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run single test to checkm due to database download
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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