Merge pull request #608 from nf-core/update-gtdbtk-classifwy

Update gtdbtk classifywf so doesn't break when mashdb given
nf-core · Mar 26, 2024 · 1ffa881 · 1ffa881
2 parents 9898052 + 6f870d9
commit 1ffa881
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#606](https://github.com/nf-core/mag/pull/606) - Prevent pipeline crash when premade mashdb given to or no alignments found with GTDB-TK_CLASSIFYWF (reported by @cedwardson4, fix by @jfy133)
+
 ### `Dependencies`
 
 ### `Deprecated`

diff --git a/modules.json b/modules.json
@@ -118,7 +118,7 @@
                     },
                     "gtdbtk/classifywf": {
                         "branch": "master",
-                        "git_sha": "9bbc6a88ce3004ae4bc9f84cef762484dc2c95e5",
+                        "git_sha": "0735b6d2b509cbb5cf71d15fda819cd7392722fe",
                         "installed_by": ["modules"]
                     },
                     "gunc/downloaddb": {

diff --git a/modules/nf-core/gtdbtk/classifywf/main.nf b/modules/nf-core/gtdbtk/classifywf/main.nf
diff --git a/modules/nf-core/gtdbtk/classifywf/tests/main.nf.test b/modules/nf-core/gtdbtk/classifywf/tests/main.nf.test
diff --git a/modules/nf-core/gtdbtk/classifywf/tests/main.nf.test.snap b/modules/nf-core/gtdbtk/classifywf/tests/main.nf.test.snap
diff --git a/modules/nf-core/gtdbtk/classifywf/tests/tags.yml b/modules/nf-core/gtdbtk/classifywf/tests/tags.yml