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Important! Template update for nf-core/tools v2.14.1 #614

Merged
merged 4 commits into from
May 10, 2024
Merged

Important! Template update for nf-core/tools v2.14.1 #614

merged 4 commits into from
May 10, 2024

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nf-core-bot
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Version 2.14.1 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.14.1 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.14.1 release page.

@nf-core-bot nf-core-bot mentioned this pull request May 9, 2024
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github-actions bot commented May 10, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 13bcb40

+| ✅ 305 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-05-10 11:07:09

JoseEspinosa
JoseEspinosa approved these changes May 10, 2024
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LGTM! Feel free to merge once tests pass 🚀

@jfy133 jfy133 merged commit 600e458 into dev May 10, 2024
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@JoseEspinosa JoseEspinosa JoseEspinosa approved these changes

@jfy133 jfy133 jfy133 approved these changes

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