Make use of prefix and support gzipped input #10325
SPPearcetest.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
7 errors and 2 warnings
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pytest (iphop/predict, docker)
Process completed with exit code 1.
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pytest (iphop/predict, docker)
Process completed with exit code 1.
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pytest (iphop/predict, docker)
EACCES: permission denied, scandir '/home/ubuntu/pytest_workflow_t7hutrh4/iphop_predict_test_iphop_predict/work/2e/ab1a2aa52f2653adeaf0cca9a05043/iphop_db/db'
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pytest (iphop/predict, singularity)
The self-hosted runner: ubuntu-2204-x64_i-0fe346cfe17fd6f0c lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
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pytest (iphop/predict, conda)
Process completed with exit code 1.
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pytest (iphop/predict, conda)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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logs-conda-
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