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bcftools isec input can be bcf or bcf.gz as well as vcf.gz #10633

bcftools isec input can be bcf or bcf.gz as well as vcf.gz

bcftools isec input can be bcf or bcf.gz as well as vcf.gz #10633

Triggered via pull request May 23, 2024 12:45
Status Failure
Total duration 4m 41s
Artifacts

test.yml

on: pull_request
nf-test-changes
24s
nf-test-changes
pytest-changes
5s
pytest-changes
prettier
58s
prettier
editorconfig
9s
editorconfig
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
4s
confirm-pass
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4 errors and 2 warnings
nf-test (modules/nf-core/bcftools/isec, docker_self_hosted)
Process completed with exit code 1.
nf-test (modules/nf-core/bcftools/isec, singularity)
Process completed with exit code 1.
nf-test (modules/nf-core/bcftools/isec, conda)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.