Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

new module: deseq2/differential #2155

Closed
pinin4fjords opened this issue Oct 6, 2022 · 0 comments · Fixed by #2167
Closed

new module: deseq2/differential #2155

pinin4fjords opened this issue Oct 6, 2022 · 0 comments · Fixed by #2167
Assignees
@pinin4fjords

Comments

@pinin4fjords
Copy link
Member

pinin4fjords commented Oct 6, 2022 •
edited
Loading

See https://nfcore.slack.com/archives/CE8SSJV3N/p1664996414210659?thread_ts=1661174347.177469&cid=CE8SSJV3N

Wrapper module for differential analysis with DESeq. I have my own version, and @ggabernet flagged her existing pipeline at https://github.com/qbic-pipelines/rnadeseq.

Suggest keeping differential analysis distinct from plotting, to allow reuse of the latter and facilitate software dependency management per process.
@pinin4fjords pinin4fjords reopened this Oct 6, 2022
@pinin4fjords pinin4fjords reopened this Oct 6, 2022
@pinin4fjords pinin4fjords mentioned this issue Oct 6, 2022
Merged
14 tasks
@pinin4fjords pinin4fjords self-assigned this Oct 7, 2022
@pinin4fjords pinin4fjords linked a pull request Oct 10, 2022 that will close this issue
Add starting deseq2 differential module #2167
Merged
14 tasks
@pinin4fjords pinin4fjords changed the title new module: differential_abundance/deseq2 new module: deseq2/differential Oct 10, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@pinin4fjords pinin4fjords

Labels
None yet
Projects
No open projects
nf-core Hackathon March 2023
Archived in project
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Add starting deseq2 differential module pinin4fjords/nf-core-modules
1 participant
@pinin4fjords