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Add igenomes dedicated utils #3864

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maxulysse opened this issue Sep 25, 2023 · 1 comment
Open

Add igenomes dedicated utils #3864

maxulysse opened this issue Sep 25, 2023 · 1 comment

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@maxulysse
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          I haven't touched igenomes - you still need to use `WorkflowMain.getGenomeAttribute` for now.

Originally posted by @adamrtalbot in nf-core/tools#2430 (comment)

@adamrtalbot
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I've done zero research on this, but essentially we would need to populate the parameters with the igenomes details prior to running. I assume this needs to be done before running any parameter validation etc. I'm not certain how parameters are propagated in Nextflow and if they must occur outside a workflow scope etc.

Currently this is done in WorkflowMain as a groovy script but if parameters are preserved this could be moved over to a Nextflow function.

@maxulysse maxulysse changed the title Add igenomes support in initialise Add igenomes dedicated utils Nov 10, 2023
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