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PR checklist
Closes #1772
versions.yml
file.label
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
Few things.
Hard-coded bioconda build number
I had to force the build number in relation to bioconda/bioconda-recipes#35314 Previous builds didn't not include the required database, and it being only ~500kb, I submitted a new build to include it.
Avoid name collisions
PlasmidFinder does not include a
--prefix
parameter, so I manually move the output files to include the$prefix
this should help avoid downstream name collisions.