Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add module for stecfinder #2702

Merged
merged 4 commits into from
Oct 5, 2023
Merged

add module for stecfinder #2702

merged 4 commits into from
Oct 5, 2023

Conversation

rpetit3
Copy link
Contributor

@rpetit3 rpetit3 commented Dec 28, 2022 •
edited

PR checklist

Closes #2701

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@rpetit3 rpetit3 added new module Adding a new module Ready for Review labels Dec 28, 2022
nvnieuwk
nvnieuwk approved these changes Jan 2, 2023
View reviewed changes
Copy link
Contributor

@nvnieuwk nvnieuwk left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM!

@SPPearce SPPearce added this pull request to the merge queue Oct 5, 2023
Merged via the queue into nf-core:master with commit ff8e2cc Oct 5, 2023
10 checks passed
lrauschning pushed a commit to lrauschning/modules that referenced this pull request Oct 16, 2023
@rpetit3 @SPPearce
add module for stecfinder (nf-core#2702)
1abd72c 
* add module for stecfinder

* make prettier

* Update modules/nf-core/stecfinder/main.nf

---------

Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@SPPearce SPPearce SPPearce approved these changes

@nvnieuwk nvnieuwk nvnieuwk approved these changes

Assignees
No one assigned
Labels
new module Adding a new module ready to merge
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

new module: stecfinder
3 participants
@rpetit3 @SPPearce @nvnieuwk