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Add core detection test data to config #3199
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LGTM! test-datasets have already been merged for this!
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I think this is looking good once the test dataset is switched over
FYI @FloWuenne this is still getting chucked out of the merge queue. I'm going to give it a day or two for the post hackathon madness to cool down before trying again. |
* master: Ngscheckmate (nf-core#3094) New module Mindagap (nf-core#2860) Coreograph Module (nf-core#3201) new module wisecondorx/newref (nf-core#3212) Add core detection test data to config (nf-core#3199) Collectinsertsizemetrics (nf-core#3179) update appropriate label for freyja boot (nf-core#3215) Emit files from uncompression utilities (nf-core#3144) new tool: art_illumina (nf-core#3162) Addition of new module: Issue nf-core#3113 Survivor/filter (nf-core#3168) Removed -1 in CPU size specification for samtools in BWA module (nf-core#3205) nf-test Transition CI (nf-core#3191) new module: sourmash/index (nf-core#3163) Chopper (nf-core#3174) Update mapdage2 module (nf-core#3185) Add imaging test data in config (nf-core#3190) New subworkflow: Fastq_fastp_trim_fastqc (nf-core#3146)
This PR contributes to nf-core/test-datasets#822 by exposing test data sets for TMA core detection modules in the
test_data.config
fileversions.yml
file.label
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware