Merge pull request #138 from nf-core/dev

release 2.0.1 - fix UCSC_BEDGRAPHTOBIGWIG container
nf-core · Nov 30, 2021 · a93c846 · a93c846
2 parents 73cbe19 + 40dca1e
commit a93c846
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,13 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [2.0.1] - 2021-11-29
+
+### Bug fix
+
+* The `UCSC_BEDGRAPHTOBIGWIG` process now uses the `ucsc-bedgraphtobigwig` container
+* The full-size and minimal AWS tests have successfully finished after changing to the `ucsc-bedgraphtobigwig` container
+
 ## [2.0.0] - 2021-11-26
 
 ### Major enhancements

diff --git a/conf/base.config b/conf/base.config
@@ -23,12 +23,6 @@ process {
     errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }
     maxRetries    = 1
     maxErrors     = '-1'
-    withName:UCSC_BEDGRAPHTOBIGWIG {
-        if ({ task.exitStatus in [255] }) { errorStrategy = 'ignore' }
-    }
-    withName:UCSC_BED12TOBIGBED {
-        if ({ task.exitStatus in [255] }) { errorStrategy = 'ignore' }
-    }
 
     withLabel:process_low {
         cpus   = { check_max( 2     * task.attempt, 'cpus'    ) }

diff --git a/modules/local/ucsc_bedgraphtobigwig.nf b/modules/local/ucsc_bedgraphtobigwig.nf
@@ -15,9 +15,9 @@ process UCSC_BEDGRAPHTOBIGWIG {
 
     conda     (params.enable_conda ? "bioconda::ucsc-bedgraphtobigwig=377" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/ucsc-bedtobigbed:377--h446ed27_1"
+        container "https://depot.galaxyproject.org/singularity/ucsc-bedgraphtobigwig:377--h446ed27_1"
     } else {
-        container "quay.io/biocontainers/ucsc-bedtobigbed:377--h446ed27_1"
+        container "quay.io/biocontainers/ucsc-bedgraphtobigwig:377--h446ed27_1"
     }
 
     input:

diff --git a/nextflow.config b/nextflow.config
@@ -215,7 +215,7 @@ manifest {
     description     = 'A pipeline to demultiplex, QC and map Nanopore data'
     mainScript      = 'main.nf'
     nextflowVersion = '!>=21.04.0'
-    version         = '2.0.0'
+    version         = '2.0.1'
 }
 
 // Function to ensure that resource requirements don't go beyond