chore: nf-core modules update pints/caller

hyulab/PINTS#12
nf-core · Oct 31, 2022 · 841ae62 · 841ae62
1 parent a6136fd
commit 841ae62
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Showing 4 changed files with 6 additions and 11 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Fixed
 
+- Updated PINTS version from 1.1.6 to 1.1.8 ([Fixes an issue where PINTS fails if one of the predictions was empty](https://github.com/hyulab/PINTS/issues/12))
+
 ### Deprecated
 
 ### Removed

diff --git a/conf/test.config b/conf/test.config
@@ -32,10 +32,3 @@ params {
     filter_bed = "${projectDir}/tests/samplesheets/unwanted_region.bed"
     intersect_bed = "${projectDir}/tests/samplesheets/wanted_region.bed"
 }
-
-process {
-    // FIXME https://github.com/hyulab/PINTS/issues/12
-    withName: PINTS_CALLER {
-        ext.when = false
-    }
-}
diff --git a/modules.json b/modules.json
@@ -107,7 +107,7 @@
                     },
                     "pints/caller": {
                         "branch": "master",
-                        "git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
+                        "git_sha": "ad1e966b5123a2af6be786f35628c40f64771097"
                     },
                     "preseq/ccurve": {
                         "branch": "master",

diff --git a/modules/nf-core/pints/caller/main.nf b/modules/nf-core/pints/caller/main.nf