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31 Open 24 Closed
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Issues list

Issue with concatenation of technical replicates bug Something isn't working
#143 opened May 7, 2024 by bug1303
Consider Scatter Gather for processing speed enhancement New feature or request
#127 opened Jan 16, 2024 by edmundmiller
Saving BWA MEM log enhancement New feature or request
#124 opened Oct 19, 2023 by Caffeinated-Code 2.3.0
@edmundmiller
Discrepancy between bigwigs generated by bedtools and deeptools bug Something isn't working
#123 opened Oct 19, 2023 by Caffeinated-Code 2.3.0
@edmundmiller
Test results say chr22 when the ref is chr21? bug Something isn't working
#121 opened Sep 27, 2023 by edmundmiller
@edmundmiller
Flipped bigwig strands in PROseq samples bug Something isn't working
#115 opened Jun 29, 2023 by Caffeinated-Code
@edmundmiller
2
Add in nf-validation for samplesheet enhancement New feature or request
#114 opened Jun 26, 2023 by edmundmiller 2.3.0
1
@edmundmiller
2
Bedtools sort output isn't deterministic bug Something isn't working
#102 opened Jan 19, 2023 by edmundmiller
Improve reporting when no transcripts are found enhancement New feature or request
#95 opened Oct 31, 2022 by edmundmiller
@edmundmiller
Example of 3D genome integration enhancement New feature or request
#93 opened Oct 26, 2022 by edmundmiller
motif production for region enhancement New feature or request
#92 opened Oct 26, 2022 by edmundmiller
Example of integration with ATAC-seq pipeline output enhancement New feature or request
#91 opened Oct 26, 2022 by edmundmiller
Support STAR enhancement New feature or request
#90 opened Oct 26, 2022 by edmundmiller
Clean up published files enhancement New feature or request
#89 opened Oct 25, 2022 by edmundmiller
Add plotHeatmap by Gene and by Transcript enhancement New feature or request
#88 opened Oct 25, 2022 by edmundmiller
@edmundmiller
Refactor ext.when enhancement New feature or request
#85 opened Oct 21, 2022 by edmundmiller
Migrate CI tests to pytest-workflow enhancement New feature or request
#84 opened Oct 20, 2022 by edmundmiller
@edmundmiller
Set up AWS Full tests enhancement New feature or request
#78 opened Oct 17, 2022 by edmundmiller
@edmundmiller
Include Homer annotate peaks from chip-seq enhancement New feature or request
#73 opened Oct 4, 2022 by edmundmiller
@edmundmiller
Add PINTS Visualizer enhancement New feature or request
#72 opened Oct 3, 2022 by edmundmiller
Create Subway pipeline enhancement New feature or request
#68 opened Sep 21, 2022 by edmundmiller
1
@sruthipsuresh
Optimize grohmm parameter tuning and transcript calling enhancement New feature or request
#67 opened Sep 19, 2022 by edmundmiller
2
Refactor Prepare Genome enhancement New feature or request
#60 opened Sep 12, 2022 by edmundmiller
Add homer uniqmap creation enhancement New feature or request
#57 opened Sep 7, 2022 by edmundmiller
@edmundmiller
GROHMM and CHM13 bug Something isn't working
#56 opened Sep 5, 2022 by edmundmiller
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