Merge pull request #26 from nf-core/bump-sage-version

Bump SAGE to 3.4.3
nf-core · May 10, 2024 · bb86c80 · bb86c80
2 parents efe5185 + c02df3e
commit bb86c80
Show file tree

Hide file tree

Showing 6 changed files with 9 additions and 9 deletions.
diff --git a/modules/local/sage/append/environment.yml b/modules/local/sage/append/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::hmftools-sage=3.4=hdfd78af_1
+  - bioconda::hmftools-sage=3.4.3
diff --git a/modules/local/sage/append/main.nf b/modules/local/sage/append/main.nf
@@ -4,8 +4,8 @@ process SAGE_APPEND {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4--hdfd78af_1' :
-        'biocontainers/hmftools-sage:3.4--hdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(vcf), path(bam), path(bai)

diff --git a/modules/local/sage/germline/environment.yml b/modules/local/sage/germline/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::hmftools-sage=3.4=hdfd78af_1
+  - bioconda::hmftools-sage=3.4.3
diff --git a/modules/local/sage/germline/main.nf b/modules/local/sage/germline/main.nf
@@ -4,8 +4,8 @@ process SAGE_GERMLINE {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4--hdfd78af_1' :
-        'biocontainers/hmftools-sage:3.4--hdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)

diff --git a/modules/local/sage/somatic/environment.yml b/modules/local/sage/somatic/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::hmftools-sage=3.4=hdfd78af_1
+  - bioconda::hmftools-sage=3.4.3
diff --git a/modules/local/sage/somatic/main.nf b/modules/local/sage/somatic/main.nf
@@ -6,8 +6,8 @@ process SAGE_SOMATIC {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4--hdfd78af_1' :
-        'biocontainers/hmftools-sage:3.4--hdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
+        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)