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Merge pull request #145 from daichengxin/dev
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,26 @@ | ||
/* | ||
* ------------------------------------------------- | ||
* Nextflow config file for running tests with | ||
* modification localization | ||
* ------------------------------------------------- | ||
* Defines bundled input files and everything required | ||
* to run a fast and simple test. Use as follows: | ||
* nextflow run nf-core/quantms -profile test_localize,<docker/singularity/podman> | ||
*/ | ||
|
||
params { | ||
config_profile_name = 'Test phospho-localization profile' | ||
config_profile_description = 'Minimal test dataset to check pipeline function for phospho-localization, SDRF parsing and ConsensusID.' | ||
|
||
// Limit resources so that this can run on Travis | ||
max_cpus = 2 | ||
max_memory = 6.GB | ||
max_time = 1.h | ||
|
||
// Input data | ||
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/proteomicslfq/testdata/phospho/test_phospho.sdrf' | ||
database = 'https://raw.githubusercontent.com/nf-core/test-datasets/quantms/testdata/lfq_ci_phospho/pools_crap_targetdecoy.fasta' | ||
enable_mod_localization = true | ||
search_engines = 'comet,msgf' | ||
enable_qc = true | ||
} |
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Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -31,4 +31,4 @@ output: | |
description: log file | ||
pattern: "*.log" | ||
authors: | ||
- "@Chengxin Dai" | ||
- "@daichengxin" |
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