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Parse input vcf to check for normalization #36

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jemten opened this issue Oct 5, 2021 · 0 comments · Fixed by #45
Closed

Parse input vcf to check for normalization #36

jemten opened this issue Oct 5, 2021 · 0 comments · Fixed by #45
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enhancement Improvement for existing functionality
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@jemten
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jemten commented Oct 5, 2021

Is your feature request related to a problem? Please describe

We need to know that the input vcf:s used in for example the annotation process have been decomposed.

Describe the solution you'd like

Write a small script that parses the header and checks for bcftools norm command.

Describe alternatives you've considered

Additional context

@jemten jemten added the enhancement Improvement for existing functionality label Oct 5, 2021
@projectoriented projectoriented added this to In progress in raredisease Nov 10, 2021
@projectoriented projectoriented moved this from In progress to Review in raredisease Nov 17, 2021
@jemten jemten moved this from Review to Done in raredisease Dec 6, 2021
@projectoriented projectoriented linked a pull request Dec 13, 2021 that will close this issue
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@projectoriented projectoriented mentioned this issue Dec 13, 2021
10 tasks
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Labels
enhancement Improvement for existing functionality
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