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Check and create tbi index for bed inputs #67

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ramprasadn opened this issue Dec 16, 2021 · 2 comments · Fixed by #68
Closed

Check and create tbi index for bed inputs #67

ramprasadn opened this issue Dec 16, 2021 · 2 comments · Fixed by #68
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@ramprasadn
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enhancement Improvement for existing functionality
Projects
raredisease
Milestone
Structural Varian...

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@ramprasadn
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Description of feature

Create a subworkflow to check if proper indices are available for bed files and create them when not.
@ramprasadn ramprasadn added the enhancement Improvement for existing functionality label Dec 16, 2021
@ramprasadn ramprasadn self-assigned this Dec 16, 2021
@projectoriented projectoriented added this to To do for subworkflow/pipeline in raredisease via automation Dec 16, 2021
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What milestone is this part of?

@ramprasadn ramprasadn linked a pull request Dec 16, 2021 that will close this issue
check and create tbi index for bed files #68
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@ramprasadn
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Manta has an option to take in a target bed file, that when I occurred to me that we need something similar to check vcf subworkflow, but for bed files. So I suppose this can be a part of structural variant calling milestone for now :)

raredisease automation moved this from To do for subworkflow/pipeline to Done Dec 20, 2021
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@ramprasadn ramprasadn

Labels
enhancement Improvement for existing functionality
Projects
raredisease
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Milestone
Structural Variant Calling
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Successfully merging a pull request may close this issue.

check and create tbi index for bed files Clinical-Genomics/raredisease
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@ramprasadn @projectoriented