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Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases #403

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merged 1 commit into from Sep 18, 2023
Merged

Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases #403

merged 1 commit into from Sep 18, 2023

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rannick
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@rannick rannick commented Sep 18, 2023 •
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Closes: #402

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnafusion branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@rannick rannick self-assigned this Sep 18, 2023
@rannick rannick requested a review from fevac September 18, 2023 09:29
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github-actions bot commented Sep 18, 2023 •
edited

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f876680

+| ✅ 157 tests passed       |+
!| ❗   1 tests had warnings |!

❗ Test warnings:

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-09-18 09:31:21

fevac
fevac approved these changes Sep 18, 2023
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🚀

CHANGELOG.md
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Provide gene count file by default when running STAR_FOR_STARFUSION [#385](https://github.com/nf-core/rnafusion/pull/385)
- Fix fusion-report issue with MACOXS directories [#386](https://github.com/nf-core/rnafusion/pull/386)
- The fusion lists is updated to contain two branches, one in case no fusions are detected and one for if fusions are detected, that will be used to feed to fusioninspector, megafusion, arriba visualisation [#388](https://github.com/nf-core/rnafusion/pull/388)
- Update fusionreport to 2.1.5p4 to fix 403 error in downloading databases
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add PR

@rannick rannick merged commit 14a69c2 into dev Sep 18, 2023
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@rannick rannick deleted the update_fusionreport branch September 18, 2023 09:36
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multiprocessing.pool.MaybeEncodingError building reference for fusion-report
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