feat(nf-schema): replace nf-validation@1.3 by nf-schema@2.0.0 #2527

Run time

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Job	Run time
Check for changes	4m 44s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything	2m 25s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything	1m 17s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	27s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything	56s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything	47s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything	1m 2s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything	4m 57s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything	34s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything	2m 39s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything	1m 31s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything	1m 7s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything	53s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything	47s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything	46s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything	49s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything	3m 16s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything	1m 0s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything	47s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything	36s
subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything	2m 13s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything	1m 2s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything	1m 16s
tests/default.main.nf.test docker NF-latest-everything	10m 12s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything	59s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything	2m 25s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything	1m 8s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything	43s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything	59s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything	1m 1s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything	1m 26s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything	1m 11s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything	1m 41s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything	37s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything	43s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything	1m 28s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything	1m 30s
tests/skip_trimming.main.nf.test docker NF-latest-everything	8m 25s
tests/min_mapped_reads.main.nf.test docker NF-latest-everything	9m 41s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything	1m 50s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything	44s
tests/kallisto.main.nf.nf.test docker NF-latest-everything	4m 48s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything	1m 0s
modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything	1m 18s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything	40s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything	1m 9s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything	1m 15s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything	53s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything	39s
modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything	47s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything	38s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything	8m 16s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	40s
modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything	1m 33s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything	41s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything	1m 10s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything	3m 53s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything	7m 27s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything	47s
tests/remove_ribo_rna.main.nf.test docker NF-latest-everything	13m 12s
tests/skip_qc.main.nf.test docker NF-latest-everything	8m 25s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything	1m 2s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything	1m 15s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything	1m 48s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything	1m 31s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything	2m 4s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything	2m 8s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything	45s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything	2m 9s
tests/salmon.main.nf.test docker NF-latest-everything	4m 45s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything	43s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything	46s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything	49s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything	2m 18s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything	1m 4s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything	45s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything	1m 1s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything	1m 41s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything	50s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything	50s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything	1m 1s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything	54s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything	48s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything	8m 54s
modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything	34s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything	1m 8s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything	53s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything	1m 17s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything	1m 14s
tests/featurecounts.main.nf.test docker NF-latest-everything	9m 59s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything	1m 1s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04	2m 7s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04	1m 16s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04	33s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04	49s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04	57s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04	1m 0s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04	4m 9s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04	42s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04	2m 53s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04	1m 29s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04	1m 12s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04	46s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04	43s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04	1m 14s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04	3m 11s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04	1m 8s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04	52s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04	34s
subworkflows/local/align_star/tests/main.nf.test docker NF-23.04	2m 42s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04	1m 4s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04	1m 51s
tests/default.main.nf.test docker NF-23.04	11m 4s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04	52s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04	2m 10s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04	1m 8s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04	39s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04	55s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04	1m 0s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04	1m 19s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04	36s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04	40s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04	1m 3s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04	24m 17s
tests/skip_trimming.main.nf.test docker NF-23.04	7m 42s
tests/min_mapped_reads.main.nf.test docker NF-23.04	10m 0s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04	1m 25s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04	43s
tests/kallisto.main.nf.nf.test docker NF-23.04	5m 27s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04	1m 15s
modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04	1m 4s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04	41s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04	1m 5s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04	1m 2s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04	53s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04	37s
modules/local/gtf_filter/tests/main.nf.test docker NF-23.04	41s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04	42s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04	8m 22s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04	28s
modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04	1m 30s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04	59s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04	1m 13s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04	3m 24s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04	7m 14s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04	46s
tests/remove_ribo_rna.main.nf.test docker NF-23.04	13m 16s
tests/skip_qc.main.nf.test docker NF-23.04	7m 54s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04	1m 20s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04	1m 16s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04	1m 24s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04	1m 44s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04	1m 47s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04	1m 59s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04	48s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04	1m 46s
tests/salmon.main.nf.test docker NF-23.04	4m 57s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04	28s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04	59s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04	2m 4s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04	57s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04	44s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04	50s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04	1m 35s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04	39s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04	40s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04	56s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04	57s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04	42s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04	8m 15s
modules/local/gtf2bed/tests/main.nf.test docker NF-23.04	34s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04	1m 16s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04	1m 21s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04	56s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04	1m 31s
tests/featurecounts.main.nf.test docker NF-23.04	10m 29s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04	44s
confirm-pass	1s
	6h 50m 41s

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feat(nf-schema): replace nf-validation@1.3 by nf-schema@2.0.0 #2527

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feat(nf-schema): replace nf-validation@1.3 by nf-schema@2.0.0 #2527

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