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Use decimal values for --min_mapped_reads #814

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royfrancis opened this issue Apr 27, 2022 · 2 comments
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Use decimal values for --min_mapped_reads #814

royfrancis opened this issue Apr 27, 2022 · 2 comments
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enhancement WIP Work in progress
Milestone
3.7

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@royfrancis
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royfrancis commented Apr 27, 2022 •
edited

Description of feature

--min_mapped_reads is currently set to an integer which means the lowest possible value is 1. In rare cases, it would be nice to manually set to a value below 1. For example if only 0.5% of the reads are mappable. Slack
@drpatelh drpatelh added this to the 3.7 milestone Apr 28, 2022
drpatelh added a commit to drpatelh/nf-core-rnaseq that referenced this issue Apr 28, 2022
@drpatelh
Fix nf-core#814
7871ee0
@drpatelh drpatelh mentioned this issue Apr 28, 2022
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@drpatelh drpatelh added the WIP Work in progress label Apr 28, 2022
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This was fixed in #813 @royfrancis. Be great if you can test with nextflow run nf-core/rnaseq <YOUR_PARAMETERS> -r dev to confirm.

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royfrancis commented May 1, 2022 •
edited

I can confirm that it works!

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