-
Notifications
You must be signed in to change notification settings - Fork 678
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Salmon quant not run after FastQ subsampling if index not provided #919
Comments
Hi @freedog8 ! Thanks for reporting. Can you please provide the (redacted) |
@drpatelh I cannot provide the log file as it has been replaced. But when I add the parameter "--pseudo-aligner 'salmon'" the pipeline goes further. |
Ok. No worries. Are you able to provide the samplesheet you used? You can change the paths. I mainly need to see the format. As well as any custom config files. |
Actually, if you used
|
I was able to reproduce with the minimal parameters below using the latest code on Command
|
Description of the bug
only few part of the pipeline were run
Command used and terminal output
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: