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Improved ext.args consolidation for STAR and TRIMGALORE #1248

Merged
merged 5 commits into from
Apr 18, 2024
Merged

Improved ext.args consolidation for STAR and TRIMGALORE #1248

merged 5 commits into from
Apr 18, 2024

Commits on Apr 16, 2024

  1. Improve the extra_args parameter consolidation so it can override pre… 

    …sets from the config.
    @MatthiasZepper
    MatthiasZepper committed Apr 16, 2024
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  2. Changelog update.

    @MatthiasZepper
    MatthiasZepper committed Apr 16, 2024
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  3. Implement Jonathan Manning's map-method for extra argument consolidat… 

    …ion for the local STAR alignment subworkflow.
    @MatthiasZepper
    MatthiasZepper committed Apr 16, 2024
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  4. Implement Jonathan Manning's map-method for extra argument consolidat… 

    …ion for the FastQC-UMItools-Trimgalore subworkflow..
    @MatthiasZepper
    MatthiasZepper committed Apr 16, 2024
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Commits on Apr 17, 2024

  1. Apply @pinin4fjords (Jonathan Manning)'s suggestions from code review 

    Co-authored-by: Jonathan Manning <jonathan.manning@seqera.io>
    @MatthiasZepper @pinin4fjords
    MatthiasZepper and pinin4fjords committed Apr 17, 2024
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