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Small updates noticed during code review #1265

Merged
merged 7 commits into from
Mar 13, 2024
Merged

Small updates noticed during code review #1265

merged 7 commits into from
Mar 13, 2024

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drpatelh
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github-actions bot commented Mar 13, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 9584d70

+| ✅ 169 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • nextflow_config - Config default ignored: params.ribo_database_manifest
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: assets/email_template.html
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/rnaseq/rnaseq/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-03-13 11:54:54

pinin4fjords
pinin4fjords approved these changes Mar 13, 2024
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Nothing controversial here

@drpatelh drpatelh merged commit bf7883e into nf-core:dev Mar 13, 2024
31 checks passed
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@pinin4fjords pinin4fjords pinin4fjords approved these changes

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@drpatelh @pinin4fjords