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nf-core/rnaseq v3.5 - Copper Chameleon
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@drpatelh drpatelh released this 17 Dec 16:08
· 920 commits to master since this release
3.5
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[3.5] - 2021-12-17

Enhancements & fixes

  • Port pipeline to the updated Nextflow DSL2 syntax adopted on nf-core/modules
    • Removed --publish_dir_mode as it is no longer required for the new syntax
  • Bump minimum Nextflow version from 21.04.0 -> 21.10.3
  • Updated pipeline template to nf-core/tools 2.2
  • [#664] - Conflict of library names for technical replicates
  • [#720] - KeyError 'gene_id' in salmon_tx2gene.py
  • [#724] - Deal with warnings generated when native NF processes are used
  • [#725] - Untar needs --no-same-owner on DNAnexus
  • [#727] - Fix transcriptome staging issues on DNAnexus for rsem/prepareference
  • [#728] - Add RSeQC TIN.py as a quality metric for the pipeline
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