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Following the verification that I had the latest versions of nf-core, Nextflow, and Singularity installed, I tried to download Sarek for offline usage. Regardless of the Sarek version I aimed to download, Singularity always encountered a failure at the same stage: pulling the GATK image. The corresponding error message was as follows:
Found 36 containers
Pulling singularity images
• 34/36 completed
broadinstitute/gatk4.3.0.0 Copying from cache to target directory CRITICAL [Errno 2] No such file or directory:
path..../broadinstitute-gatk-4.3.0.0.img
Description of the bug
Following the verification that I had the latest versions of nf-core, Nextflow, and Singularity installed, I tried to download Sarek for offline usage. Regardless of the Sarek version I aimed to download, Singularity always encountered a failure at the same stage: pulling the GATK image. The corresponding error message was as follows:
Found 36 containers
Pulling singularity images
• 34/36 completed
broadinstitute/gatk4.3.0.0 Copying from cache to target directory
CRITICAL [Errno 2] No such file or directory:
path..../broadinstitute-gatk-4.3.0.0.img
Command used and terminal output
nf-core download sarek -r 3.1.2 --container singularity
Relevant files
System information
nextflow version 23.04.1.5866
Hardware HPC
executor local
singularity-ce version 3.11.3
"CentOS Linux"
sarek 3.1.2
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