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The Singularity fails while attempting to pull a specific image required for offline usage of Sarek. #1086

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Hadi90Eidgah opened this issue Jun 8, 2023 · 0 comments
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@Hadi90Eidgah
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Description of the bug

Following the verification that I had the latest versions of nf-core, Nextflow, and Singularity installed, I tried to download Sarek for offline usage. Regardless of the Sarek version I aimed to download, Singularity always encountered a failure at the same stage: pulling the GATK image. The corresponding error message was as follows:

Found 36 containers
Pulling singularity images
• 34/36 completed
broadinstitute/gatk4.3.0.0 Copying from cache to target directory
CRITICAL [Errno 2] No such file or directory:
path..../broadinstitute-gatk-4.3.0.0.img

Command used and terminal output

nf-core download sarek -r 3.1.2 --container singularity

Relevant files

Screenshot 2023-06-08 at 12 49 45

System information

nextflow version 23.04.1.5866
Hardware HPC
executor local
singularity-ce version 3.11.3
"CentOS Linux"
sarek 3.1.2

@Hadi90Eidgah Hadi90Eidgah added the bug Something isn't working label Jun 8, 2023
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