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Issues list

question regarding computational power
#1724 opened Nov 4, 2024 by mggrami
the vcf file from haplotypecaller was not annotated by snpeff and vep bug Something isn't working
#1722 opened Nov 2, 2024 by ybdong919
2
how to use custom vep database for microbe, such as Candian.aruis bug Something isn't working
#1720 opened Oct 31, 2024 by ybdong919
Provide default UMI/trimming library specific values enhancement New feature or request
#1719 opened Oct 31, 2024 by maxulysse
The target server failed to respond bug Something isn't working
#1718 opened Oct 30, 2024 by torres-HI
1
Tutorial: long reads analysis enhancement New feature or request
#1717 opened Oct 30, 2024 by lescai
Check if flowcell id is uniform in a fastq file enhancement New feature or request
#1716 opened Oct 30, 2024 by pmoris
Add library metadata and extend read group info enhancement New feature or request
#1715 opened Oct 30, 2024 by pmoris
Tutorial: UMI enhancement New feature or request
#1714 opened Oct 30, 2024 by FriederikeHanssen
Tutorial: CNV calling enhancement New feature or request
#1713 opened Oct 30, 2024 by FriederikeHanssen
Proposals for Sarek Tutorials on use-cases docs help wanted Extra attention is needed testing
#1704 opened Oct 28, 2024 by lescai
3
Shard 5 : Error: no valid tests found bug Something isn't working
#1703 opened Oct 28, 2024 by maxulysse
Remove pytest-workflow
#1700 opened Oct 28, 2024 by edmundmiller
Get a full nf-test report in cis
#1699 opened Oct 28, 2024 by edmundmiller
1
Hackathon Items
#1697 opened Oct 28, 2024 by edmundmiller
vep_loftee doesn't add the expected columns to INFO/CSQ bug Something isn't working
#1691 opened Oct 21, 2024 by MahShaaban
2
Problem with intervals file
#1690 opened Oct 20, 2024 by Eduardo-Auer
3
Haplotypecaller exit status 402
#1687 opened Oct 14, 2024 by janejajajuana
5
No status is 0 - but contains tumor only sample error message bug Something isn't working
#1685 opened Oct 11, 2024 by maxulysse
1
Issue: FASTQC Process Fails with Exit Code 140 in nf-core/sarek Pipeline Using Singularity bug Something isn't working
#1683 opened Oct 10, 2024 by SirAymane
Mutations called by Mutect2 in paired mode are not annotated by VEP bug Something isn't working
#1679 opened Oct 8, 2024 by Janzulene
terminated for an unknown reason -- Likely it has been terminated by the external system question Further information is requested
#1676 opened Oct 7, 2024 by fan040
2
Pipeline does not stop immediately, when non-unique samples are provided in the samplesheet bug Something isn't working
#1674 opened Oct 3, 2024 by milcs40
Read data length does not match expected size - bytes read: 2756; expected: 16013759 bug Something isn't working
#1672 opened Oct 2, 2024 by maxulysse
1
Implementation of Indel and Multiallelic Variant Normalization in Sarek Pipeline enhancement New feature or request
#1666 opened Sep 27, 2024 by Patricie34
ProTip! What’s not been updated in a month: updated:<2024-10-04.