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Profiler: diamond #13

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jfy133 opened this issue Feb 18, 2022 · 1 comment
Closed

Profiler: diamond #13

jfy133 opened this issue Feb 18, 2022 · 1 comment
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enhancement Improvement for existing functionality first-release Functionality defined in initial design
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1.0.0 - Dodgy Dac...

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jfy133 commented Feb 18, 2022

Description of feature

DIAMOND - high throughput protein alignment
DIAMOND is a high-throughput program for aligning DNA reads or protein sequences against a protein reference database such as NR, at up to 20,000 times the speed of BLAST, with high sensitivity.

On Illumina reads of length 100-150bp, in fast mode, DIAMOND is about 20,000 times faster than BLASTX, while reporting about 80-90% of all matches that BLASTX finds, with an e-value of at most 1e-5. In sensitive mode, DIAMOND ist about 2,500 times faster than BLASTX, finding more than 94% of all matches.

https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/diamond/
@jfy133 jfy133 added enhancement Improvement for existing functionality requires-module Profilers that do not yet have a nf-core/module and removed requires-module Profilers that do not yet have a nf-core/module labels Feb 18, 2022
@jfy133 jfy133 added the first-release Functionality defined in initial design label Apr 16, 2022
@jfy133 jfy133 self-assigned this Apr 26, 2022
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jfy133 commented May 1, 2022

Done in #72

@jfy133 jfy133 closed this as completed May 1, 2022
@jfy133 jfy133 added this to the First Release milestone May 1, 2022
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enhancement Improvement for existing functionality first-release Functionality defined in initial design
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1.0.0 - Dodgy Dachsund
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