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Added gene models for actinidia_chinensis chr1 #1176

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May 28, 2024
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4 changes: 4 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@ The `generic` folder contains generic files that currently cannot be associated

The genomics folder contains subfolders for all organisms for which test data is available. At the moment, there are these organisms available in various places:

- actinidia_chinensis
- bacteroides_fragilis
- candidatus_portiera_aleyrodidarum
- deilephila_porcellus (mitochondrion)
Expand Down Expand Up @@ -646,6 +647,9 @@ The folder is structured in the following way: Any nonspecific-pangenome file is
- genome
- chr1
- genome.fasta.gz: Chr1 bases 1 to 7 million acquired from [Zenodo/10.5281/zenodo.5717386](https://zenodo.org/doi/10.5281/zenodo.5717386)
- genome.gff3.gz: Gene models predicted by BRAKER3 pipeline on genome.fasta.gz and formatted by GenomeTools `gt gff3 -tidy -retainids` tool
- genome.gtf.gz: genome.gff3.gz converted to GTF format with `agat_convert_sp_gff2gtf.pl` script
- genome.hints.gff.gz: Hints file produced by BRAKER3 pipeline

### pangenomics

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