Workflow file for this run
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| name: nf-core template version comment | |
| # This workflow is triggered on PRs to check if the pipeline template version matches the latest. | |
| # It posts a comment on the PR, even if it comes from a fork. | |
| on: | |
| pull_request_target: | |
| jobs: | |
| check_version: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
| - name: Read template version from .nf-core.yml | |
| uses: pietrobolcato/action-read-yaml@1.0.0 | |
| id: read_yml | |
| with: | |
| config: ${{ github.workspace }}/.nf-core.yml | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install nf-core==${{ steps.read_yml.outputs['nf_core_version'] }} | |
| - name: Check nf-core outdated | |
| id: nf_core_outdated | |
| run: pip list --outdated | grep nf-core | |
| - name: Post nf-core last version comment | |
| uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2 | |
| if: | | |
| ${{ steps.nf_core_outdated.outputs.stdout }} =~ 'nf-core' | |
| with: | |
| repo-token: ${{ secrets.NF_CORE_BOT_AUTH_TOKEN }} | |
| allow-repeats: false | |
| message: | | |
| ## :warning: New nf-core template version available | |
| Your pipeline is using an old version of the nf-core template: ${{ steps.read_yml.outputs['nf_core_version'] }}. | |
| Please update your pipeline to the latest version. |