Add warning deprecation message to top-level commands #7158
nf-core-botAnnotations
3 errors and 43 warnings
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Run test_create_app.py with Python 3.12 on ubuntu-latest
Process completed with exit code 1.
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Run test_modules.py with Python 3.12 on ubuntu-latest
Process completed with exit code 1.
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Run test_components.py with Python 3.12 on ubuntu-latest
no submodule mapping found in .gitmodules for path 'tmp/pytest-of-gitpod/pytest-0/test_github_details0'
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Get test file matrix
The process '/usr/bin/git' failed with exit code 128
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Run test_licenses.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_licenses.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create_logo.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create_logo.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_cli.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_cli.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_list.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_list.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_params_file.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_params_file.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_test_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_lint_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_refgenie.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_refgenie.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_bump_version.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_bump_version.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_utils.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_utils.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_sync.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_sync.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_launch.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_launch.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_create_app.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_schema.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_schema.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_download.py with Python 3.12 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_download.py with Python 3.12 on ubuntu-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run test_download.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_download.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_lint.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_lint.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_modules.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_modules.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_subworkflows.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Run test_components.py with Python 3.12 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_components.py with Python 3.12 on ubuntu-latest
Unable to clean or reset the repository. The repository will be recreated instead.
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Run test_components.py with Python 3.12 on ubuntu-latest
The process '/usr/bin/git' failed with exit code 128
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Artifacts
Produced during runtime
| Name | Size | |
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Snapshot Report test_create_app.py
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75.8 KB |
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coverage_test_bump_version.py
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5.04 KB |
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coverage_test_cli.py
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6.81 KB |
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coverage_test_components.py
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6.35 KB |
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coverage_test_create.py
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6.37 KB |
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coverage_test_create_logo.py
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4.94 KB |
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coverage_test_download.py
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6.59 KB |
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coverage_test_launch.py
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6.5 KB |
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coverage_test_licenses.py
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4.28 KB |
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coverage_test_lint.py
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6.85 KB |
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coverage_test_lint_utils.py
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4.92 KB |
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coverage_test_list.py
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4.96 KB |
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coverage_test_params_file.py
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5.07 KB |
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coverage_test_refgenie.py
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4.97 KB |
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coverage_test_schema.py
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6.43 KB |
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coverage_test_subworkflows.py
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6.81 KB |
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coverage_test_sync.py
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6.42 KB |
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coverage_test_test_utils.py
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6.28 KB |
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coverage_test_utils.py
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6.37 KB |
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