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v2.1 - Zinc Zebra
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@ErikDanielsson ErikDanielsson released this 27 Jul 14:57
· 5845 commits to master since this release
2.1
b48bce2
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Template

  • Correct regex pattern for file names in nextflow_schema.json
  • Remove . from nf-core/tools command examples
  • Update Nextflow installation link in pipeline template (#1201)
  • Command hostname is not portable [#1212]
  • Changed how singularity and docker links are written in template to avoid duplicate links

General

  • Changed names of some flags with -r as short options to make the flags more consistent between commands.

Modules

  • Added consistency checks between installed modules and modules.json (#1199)
  • Added support excluding or specifying version of modules in .nf-core.yml when updating with nf-core modules install --all (#1204)
  • Created nf-core modules update and removed updating options from nf-core modules install
  • Added missing function call to nf-core lint (#1198)
  • Fix nf-core lint not filtering modules test when run with --key (#1203)
  • Fixed nf-core modules install not working when installing from branch with -b (#1218)
  • Added prompt to choose between updating all modules or named module in nf-core modules update
  • Check if modules is installed before trying to update in nf-core modules update
  • Verify that a commit SHA provided with --sha exists for install/update commands
  • Add new-line to main.nf after bump-versions command to make ECLint happy
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