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fix errors in docs images generated with rich-codex #2539

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merged 1 commit into from
May 29, 2024
Merged

fix errors in docs images generated with rich-codex #2539

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19 changes: 9 additions & 10 deletions .github/rich-codex.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ outputs:
title: nextflow run
img_paths:
- public/images/contributing/creating_with_nf_core/nextflow_run_no_outdir.svg
- command: git clone https://github.com/nf-core/modules.git --depth 1 && cd modules && nf-core modules create fastqc --author @janedoe --label process_low --meta
- command: git clone https://github.com/nf-core/modules.git --depth 1 && cd modules && nf-core modules create fastqc --author @janedoe --label process_low --meta --force
fake_command: nf-core modules create fastqc --author @janedoe --label process_low --meta
img_paths:
- public/images/contributing/modules/nf-core-modules-create.svg
Expand Down Expand Up @@ -97,7 +97,7 @@ outputs:
- public/images/tools/nf-core-schema-validate.svg
- command: |
cd tmp/nf-core-nextbigthing && \
sed '25,30d' nextflow_schema.json > nextflow_schema.json.tmpsed '25,30d' nextflow_schema.json > nextflow_schema.json.tmp && \
sed '25,30d' nextflow_schema.json > nextflow_schema.json.tmp && \
mv nextflow_schema.json.tmp nextflow_schema.json && \
nf-core schema build --no-prompts
timeout: 10
Expand All @@ -108,10 +108,6 @@ outputs:
fake_command: nf-core schema lint
img_paths:
- public/images/tools/nf-core-schema-lint.svg
- command: cd tmp/nf-core-nextbigthing && nf-core bump-version 1.1
fake_command: nf-core bump-version 1.1
img_paths:
- public/images/tools/nf-core-bump-version.svg
- command: |
cd tmp/nf-core-nextbigthing && \
git config --global user.email "nf-core_bot@example.com" && \
Expand All @@ -121,6 +117,10 @@ outputs:
fake_command: nf-core sync
img_paths:
- public/images/tools/nf-core-sync.svg
- command: cd tmp/nf-core-nextbigthing && nf-core bump-version 1.1
fake_command: nf-core bump-version 1.1
img_paths:
- public/images/tools/nf-core-bump-version.svg
- command: cd tmp && nf-core create-logo nextbigthing
fake_command: nf-core create-logo nextbigthing
img_paths:
Expand Down Expand Up @@ -169,8 +169,7 @@ outputs:
- public/images/tools/nf-core-modules-create.svg
- command: |
cd tmp/modules && \
sed 's/1.13a/1.10/g' modules/multiqc/main.nf > modules/multiqc/main.nf.tmp && \
mv modules/multiqc/main.nf.tmp modules/multiqc/main.nf && \
sed -i 's/1.13a/1.10/g' modules/multiqc/main.nf && \
nf-core modules lint multiqc
fake_command: nf-core modules lint multiqc
img_paths:
Expand All @@ -182,8 +181,8 @@ outputs:
fake_command: nf-core modules test fastqc --no-prompts
img_paths:
- public/images/tools/nf-core-modules-test.svg
- command: cd tmp/modules && nf-core modules bump-version fastqc
fake_command: nf-core modules bump-version fastqc
- command: cd tmp/modules && nf-core modules bump-versions fastqc
fake_command: nf-core modules bump-versions fastqc
img_paths:
- public/images/tools/nf-core-modules-bump-version.svg
- command: cd tmp/nf-core-nextbigthing && nf-core subworkflows list remote
Expand Down
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