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Fix unittest for plugin/atc_less
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@ngiger
ngiger committed Jul 8, 2015
1 parent df7e943 commit a338c9d
Showing 1 changed file with 45 additions and 32 deletions.
77 changes: 45 additions & 32 deletions test/test_plugin/atc_less.rb
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Expand Up @@ -15,7 +15,7 @@ class TestAtc_lessPlugin <Minitest::Test
include FlexMock::TestCase
def setup
@latest_xlsx = File.join(ODDB::Plugin::ARCHIVE_PATH, 'xls', 'Packungen-latest.xlsx')
@latest_xml = File.join(ODDB::Plugin::ARCHIVE_PATH, 'xml', 'XMLSwissindexPharma-DE-latest.xml')
@latest_xml = File.join(ODDB::Plugin::ARCHIVE_PATH, 'xml', 'XMLRefdataPharma-latest.xml')
[@latest_xlsx, @latest_xml].each {
|file|
FileUtils.rm(file, :verbose => false) if File.exists?(file)
Expand All @@ -29,15 +29,16 @@ def test_report
expected = "ODDB::Atc_lessPlugin - Report 15.01.2015
Total time to update: 0.00 [m]
Total number of sequences with ATC-codes from swissmedic: 0
Total number of sequences with ATC-codes from swissindex: 0
Total number of sequences with ATC-codes from refdata: 0
Total Sequences without ATC-Class: 0
Swissmedic: All registrations present
Swissmedic: All sequences present
No empty ATC-codes found
All found ATC-codes were correct
All ATC codes present in database
All ATC codes from swissmedic are as long as those from swissindex
No obsolete sequence '00' found"
Checked against 0 ATC-codes from RefData
All ATC codes from swissmedic are as long as those from refdata
No obsolete sequence '00' found
Swissmedic: All registrations present"
assert_equal(expected, @plugin.report)
end

Expand All @@ -48,12 +49,14 @@ def test_missing_packungen_latest

def test_update_atc_codes

atc_J06A = flexmock(atc_J06A, :code => 'J06A')
atc_J06AA = flexmock(atc_J06AA, :code => 'J06AA')
atc_V07 = flexmock(atc_V07, :code => 'V07')
atc_V07AB = flexmock(atc_V07, :code => 'V07AB')
atc_D0XXXXX = flexmock(atc_D0XXXXX, :code => 'D0XXXXX')
atc_G03FA = flexmock(atc_G03FA, :code => 'G03FA')
atc_G03FA01 = flexmock(atc_G03FA01, :code => 'G03FA01')
atc_C08CA01 = flexmock(atc_C08CA01, :code => 'C08CA01')

seq_00274_00 = flexmock('seq_00274_00', :atc_class => nil, :iksnr => '00274', :seqnr => '00')
seq_00274_1 = flexmock('seq_00274_1', :atc_class => atc_J06AA)
Expand All @@ -66,7 +69,7 @@ def test_update_atc_codes
reg_00277 = flexmock('reg_00277')
reg_00277.should_receive(:sequence).with('01').and_return(seq_00277_1)

seq_00278_1 = flexmock('seq_00278_1', :atc_class => atc_J06AA)
seq_00278_1 = flexmock('seq_00278_1', :atc_class => atc_J06AA, :atc_class= => nil, :odba_isolated_store => nil)
reg_00278 = flexmock('reg_00278')
reg_00278.should_receive(:sequence).with('01').and_return(seq_00278_1)

Expand All @@ -84,25 +87,33 @@ def test_update_atc_codes
reg_56504 = flexmock('reg_56504')
reg_56504.should_receive(:sequence).with('01').and_return(seq_56504_1)

seq_54708_2 = flexmock('seq_54708_2', :atc_class => atc_G03FA01, :odba_isolated_store => nil)
seq_54708_1 = flexmock('seq_54708_1', :atc_class => atc_G03FA, :odba_isolated_store => nil)
seq_54708_2.should_receive(:atc_class=).never
seq_54708_1.should_receive(:atc_class=).once
reg_54708 = flexmock('reg_54708')
reg_54708.should_receive(:sequence).with('01').and_return(seq_54708_1)
reg_54708.should_receive(:sequence).with('02').and_return(seq_54708_2)
seq_57678_3 = flexmock('seq_57678_3', :atc_class => atc_C08CA01, :odba_isolated_store => nil)
seq_57678_1 = flexmock('seq_57678_1', :atc_class => atc_G03FA, :odba_isolated_store => nil)
seq_57678_3.should_receive(:atc_class=).never
seq_57678_1.should_receive(:atc_class=).never
reg_57678 = flexmock('reg_57678')
reg_57678.should_receive(:sequence).with('01').and_return(seq_57678_1)
reg_57678.should_receive(:sequence).with('03').and_return(seq_57678_3)


@app = flexmock('app_xx', :sequences => [])
@app.should_receive(:registration).with('00274').and_return(nil)
@app.should_receive(:registration).with('47066').and_return(nil)
@app.should_receive(:registration).with('48624').and_return(nil)
@app.should_receive(:registration).with('62069').and_return(nil)
@app.should_receive(:registration).with('16105').and_return(nil)
@app.should_receive(:registration).with('57678').and_return(nil)

@app.should_receive(:registration).with('00277').and_return(reg_00277)
@app.should_receive(:registration).with('00278').and_return(reg_00278)
@app.should_receive(:registration).with('00279').and_return(reg_00279)
@app.should_receive(:registration).with('56504').and_return(reg_56504)
@app.should_receive(:registration).with('54708').and_return(reg_54708)
@app.should_receive(:registration).with('57678').and_return(reg_57678)

@app.should_receive(:atc_class).with('G03FA01').and_return(atc_G03FA01)
@app.should_receive(:atc_class).with('C08CA01').and_return(atc_C08CA01)
@app.should_receive(:atc_class).with('G03FA').and_return(atc_G03FA)
@app.should_receive(:atc_class).with('J06A').and_return(atc_J06A)
@app.should_receive(:atc_class).with('J06AA').and_return(atc_J06AA)
@app.should_receive(:atc_class).with('V07AB').and_return(atc_V07AB)
@app.should_receive(:atc_class).with('V07').and_return(nil)
Expand All @@ -112,31 +123,33 @@ def test_update_atc_codes
)
@app.should_receive(:atcless_sequences).and_return [seq_00274_00]
@plugin = ODDB::Atc_lessPlugin.new(@app)

tst_xlsx = File.expand_path(File.join(File.dirname(__FILE__), '../data/xlsx/Packungen_2014_small.xlsx'))
FileUtils.cp(tst_xlsx, @latest_xlsx, :verbose => false)
tst_xml = File.expand_path(File.join(File.dirname(__FILE__), '../data/xml/XMLSwissindexPharma-DE.xml'))
FileUtils.cp(tst_xml, @latest_xml, :verbose => false)
assert_equal(true, @plugin.update_atc_codes)
FileUtils.makedirs(File.dirname(@latest_xlsx))
FileUtils.makedirs(File.dirname(@latest_xml))
tst_xlsx = File.expand_path(File.join(File.dirname(__FILE__), '../data/xlsx/Packungen-2015.07.02.xlsx'))
tst_xml = File.expand_path(File.join(File.dirname(__FILE__), '../data/xml/XMLRefdataPharma-2015.07.01.xml'))
FileUtils.cp(tst_xlsx, @latest_xlsx, :verbose => true)
FileUtils.cp(tst_xml, @latest_xml, :verbose => true)

result = @plugin.update_atc_codes
assert_equal(true, result)
expected = "ODDB::Atc_lessPlugin - Report 15.01.2015
Total time to update: 0.00 [m]
Total number of sequences with ATC-codes from swissmedic: 1
Total number of sequences with ATC-codes from swissindex: 1
Total number of sequences with ATC-codes from swissmedic: 0
Total number of sequences with ATC-codes from refdata: 0
Total Sequences without ATC-Class: 1
00274 00
Skipped 1 registrations
00274
Skipped 1 sequences
00279/01
Swissmedic: All sequences present
No empty ATC-codes found
Corrected 1 ATC-code in sequences
Corrected 2 ATC-code in sequences
00277/01 D0XXXXX -> J06AA
1 ATC codes absent in database
56504/01 ATC V07
1 ATC code taken from swissindex where they are longer
54708/01 G03FA -> G03FA01
00278/01 J06AA -> J06A
All ATC codes present in database
Checked against 0 ATC-codes from RefData
All ATC codes from swissmedic are as long as those from refdata
Deleted 1 sequences '00' in registrations
00279"
00279
Skipped 7 registrations
47066 48624 62069 62069 62069 16105 57678"

assert_equal(expected, @plugin.report)
end
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