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ctb committed Oct 13, 2016
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4 changes: 2 additions & 2 deletions salmon_tutorial.rst
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Expand Up @@ -86,9 +86,9 @@ The first column contains the transcript names, and the fourth column is what we
Download the gather-counts.py script:
::
curl -L -O https://raw.githubusercontent.com/ngs-docs/2016-metagenomics-sio/master/gather-counts.py
and run it:
and run it::

python ./gather-counts.py
python2 ./gather-counts.py

This will give you a bunch of .counts files, which are processed from the quant.sf files and named for the directory from which they emanate.

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