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update with gather on metagenome
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ctb committed May 9, 2017
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Expand Up @@ -179,4 +179,14 @@ the recovered matches hit 100.0% of the query
You can use this on metagenomes (assembled and unassembled) as well; you've
just got to make the signature files.

To see this in action, here is gather running on a signature generated
from some sequences that assemble (but don't align to known genomes)
from the
[Shakya et al. 2013 mock metagenome paper](https://www.ncbi.nlm.nih.gov/pubmed/23387867).

```
curl -O -L https://github.com/ngs-docs/2017-lapaz-assembly/raw/master/_images/shakya-unaligned-contigs.sig
sourmash sbt_gather -k 31 genbank-k31.sbt.json shakya-unaligned-contigs.sig
```

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