The goal of this repository is to provide the course materials that is used for the Introduction to Computational Flow Cytometry in R seminar. It includes the required code and presentation slides. It requires R version 4.3.0+ as well as Rstudio and the installation.R script can be used for installation of the required R packages.
Instructors: Gabriel Rosenfeld and Yuyan Yi
Contact: bioinformatics@niaid.nih.gov
After installing R and Rstudio, open the Rstudio and open the computational.flow.cytometry.r.Rproj file. This should open the project in Rstudio. In the console window, execute the following code: source("installation.R")
- Introductory R links and Materials: Data Science with R
- Link to R Bioconductor Flow Cytometry View: Flow Cytometry R packages
- EBI Tutorial: EBI Computational Flow Cytometry
- Review Article: Saeys et al.