SIPSimR

The repo contains R scripts assocated with the SIPSim toolset

SIPSim is a toolset for simulating data from high resolution stable isotope probing (HR-SIP) experiments.

Sections

• REFERENCE
• INSTALLATION
• CHANGE LOG
• LICENSE

REFERENCE

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If you use SIPSim, please cite:

Youngblut, ND, Buckley DH. Evaluating the accuracy of DNA stable isotope probing. doi: https://doi.org/10.1101/138719

INSTALLATION

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Dependencies

• docopt
• dplyr
• tidyr
• ggplot2
• phyloseq
• DESeq2
• fitdistrplus
• vegan
• caret
• ape
• optparse

Clone the repo

git clone https:github.com/nyoungb2/SIPSimR.git
cd SIPSimR

You can install the R scripts with:

python setup.py install

...or you can just add the scripts/ directory to your PATH

CHANGELOG

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LICENSE

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• Free software: MIT license