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files
Fast5File.py
README.md
basecallers.txt
create.py
dumpscript.sh
fastq.py
importfiles.py
poredb_main.py
requirements.txt
stats.py
updatelengths.py
version.py
worklist.py

README.md

poredb

Poredb is a way to manage very large Oxford Nanopore datasets on the basic principle:

-- track the files, rather than moving them around

Usage

Create a DB

poredb create myexperiment.db
find . -name "*.fast5" > filelist.txt
poredb import myexperiment.db filelist.txt

Extract all basecalls in FASTQ format

poredb fastq myexperiment.db > myexperiment.fastq

Thanks

Andreas Klosterman for dask suggestion.